Annotation of co-expression genes

PH01000210G0150's details annotation

1.Annotation

ICBR annotation: tRNA synthetase class I, putative, expressed

Blast result AT5G49030 : 5.60E-89
Blast annotation: tRNA synthetase class I (I, L, M and V) family protein

2.Location

Scaffold: PH01000210
Strand: +

RegionStartEnd
gene110006113285
mRNA110006113285
exon110006110938
exon111376111449
exon111647111827
exon112177112356
exon112440113285
CDS110825110938
CDS111376111449
CDS111647111827
CDS112177112356
CDS112440112688

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000231NAD biosynthetic process,
nucleotide-excision repair,
protein folding,
histone_lysine_methylation
coexpression networkCFinderM000633Aminoacyl-tRNA_biosynthesis
histone_lysine_methylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08264.12Anticodon_110151

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisisoleucyl-tRNA synthetase [EC:6.1.1.5]ko00970K01870

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004822isoleucine-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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