PH01000211G0640's details annotation
1.Annotation
ICBR annotation: dof zinc finger domain containing protein, putative, expressed
Blast result AT3G61850 : 9.10E-38
Blast annotation: Dof-type zinc finger DNA-binding family protein
2.Location
Scaffold: PH01000211
Strand: +
| Region | Start | End |
| gene | 514601 | 517630 |
| mRNA | 514601 | 517630 |
| exon | 514601 | 517630 |
| CDS | 516265 | 517317 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000162 | CAMTA Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) AGC_RSK-2 (from iTAK) zinc_ion_transmembrane_transport |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-Dof |
| Transcription_Regulator(from PlantTFDB) | Dof |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02701.14 | zf-Dof | 72 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.