PH01000213G1380's details annotation
1.Annotation
ICBR annotation: ZIM domain containing protein, putative, expressed
Blast result AT1G19180 : 1.20E-18
Blast annotation: jasmonate-zim-domain protein 1
2.Location
Scaffold: PH01000213
Strand: +
| Region | Start | End |
| gene | 893163 | 895762 |
| mRNA | 893163 | 895762 |
| exon | 893163 | 895048 |
| exon | 895177 | 895422 |
| exon | 895624 | 895762 |
| CDS | 894906 | 895048 |
| CDS | 895177 | 895422 |
| CDS | 895624 | 895729 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Tify |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06200.13 | tify | 52 | 84 |
| PF09425.9 | CCT_2 | 113 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.