Annotation of co-expression genes

PH01000214G0290's details annotation

1.Annotation

ICBR annotation: anthocyanidin 5,3-O-glucosyltransferase, putative, expressed

Blast result AT3G16520 : 6.70E-90
Blast annotation: UDP-glucosyl transferase 88A1

2.Location

Scaffold: PH01000214
Strand: -

RegionStartEnd
gene166263169166
mRNA166263169166
exon166263169166
CDS167487168947

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000634fatty acid metabolic process,
lipid transport,
lipid binding,
transition metal ion binding,
acyl-[acyl-carrier-protein] desaturase activity,
manganese ion binding,
nutrient reservoir activity,
apoplast,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00201.17UDPGT213418

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016758transferase activity, transferring hexosyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.