PH01000214G0600's details annotation
1.Annotation
ICBR annotation: selenium-binding protein, related, putative, expressed
Blast result AT2G25580 : 2.00E-113
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000214
Strand: +
| Region | Start | End |
| gene | 369695 | 373896 |
| mRNA | 369695 | 373896 |
| exon | 369695 | 370033 |
| exon | 370460 | 373896 |
| CDS | 369921 | 370033 |
| CDS | 370460 | 372863 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 453 | 474 |
| PF01535.19 | PPR | 519 | 541 |
| PF01535.19 | PPR | 546 | 572 |
| PF01535.19 | PPR | 618 | 642 |
| PF14432.5 | DYW_deaminase | 706 | 828 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.