PH01000214G1060's details annotation
1.Annotation
ICBR annotation: dual specificity protein phosphatase, putative, expressed
Blast result AT2G35680 : 4.90E-74
Blast annotation: Phosphotyrosine protein phosphatases superfamily protein
2.Location
Scaffold: PH01000214
Strand: +
| Region | Start | End |
| gene | 654906 | 660037 |
| mRNA | 654906 | 660037 |
| exon | 654906 | 656066 |
| exon | 656852 | 656974 |
| exon | 658004 | 658097 |
| exon | 659046 | 659128 |
| exon | 659220 | 659309 |
| exon | 659399 | 660037 |
| CDS | 655839 | 656066 |
| CDS | 656852 | 656974 |
| CDS | 658004 | 658097 |
| CDS | 659046 | 659128 |
| CDS | 659220 | 659309 |
| CDS | 659399 | 659800 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001474 | CMGC_CDK-CRK7-CDK9 (from iTAK) Oxidative_phosphorylation dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00782.19 | DSPc | 110 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.