PH01000214G1340's details annotation
1.Annotation
ICBR annotation: OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed
Blast result AT3G16500 : 7.70E-45
Blast annotation: phytochrome-associated protein 1
2.Location
Scaffold: PH01000214
Strand: +
| Region | Start | End |
| gene | 854752 | 860626 |
| mRNA | 854752 | 860626 |
| exon | 854752 | 856784 |
| exon | 856912 | 857086 |
| exon | 857726 | 857988 |
| exon | 858124 | 858271 |
| exon | 858548 | 858580 |
| exon | 859242 | 859305 |
| exon | 859433 | 860626 |
| CDS | 856448 | 856784 |
| CDS | 856912 | 857086 |
| CDS | 857726 | 857988 |
| CDS | 858124 | 858271 |
| CDS | 858548 | 858580 |
| CDS | 859242 | 859305 |
| CDS | 859433 | 859438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000374 | AUX/IAA Transcription_Regulator(from iTAK) GT8 GlycosylTransferases Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
| coexpression network | CFinderM000629 | RLK-Pelle_LRR-XIV (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) transcription factor TFIID complex, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Basal_transcription_factors |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AUX/IAA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02309.15 | AUX_IAA | 49 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.