PH01000215G0710's details annotation
1.Annotation
ICBR annotation: phosphoribosyl transferase, putative, expressed
Blast result AT2G42910 : 1.70E-82
Blast annotation: Phosphoribosyltransferase family protein
2.Location
Scaffold: PH01000215
Strand: +
| Region | Start | End |
| gene | 482458 | 484872 |
| mRNA | 482458 | 484872 |
| exon | 482458 | 482920 |
| exon | 483001 | 483412 |
| exon | 483504 | 483572 |
| exon | 483734 | 483862 |
| exon | 484311 | 484410 |
| exon | 484489 | 484872 |
| CDS | 482790 | 482920 |
| CDS | 483001 | 483412 |
| CDS | 483504 | 483572 |
| CDS | 483734 | 483862 |
| CDS | 484311 | 484410 |
| CDS | 484489 | 484622 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000205 | RLK-Pelle_LRR-XI-2 (from iTAK) mRNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13793.5 | Pribosyltran_N | 15 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.