PH01000215G0900's details annotation
1.Annotation
ICBR annotation: fatty acid desaturase, putative, expressed
Blast result AT3G12120 : 4.30E-69
Blast annotation: fatty acid desaturase 2
2.Location
Scaffold: PH01000215
Strand: -
| Region | Start | End |
| gene | 620705 | 623632 |
| mRNA | 620705 | 623632 |
| exon | 620705 | 621271 |
| exon | 622751 | 623632 |
| CDS | 620801 | 621271 |
| CDS | 622751 | 622753 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00487.23 | FA_desaturase | 15 | 122 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Biosynthesis of unsaturated fatty acids | omega-6 fatty acid desaturase (delta-12 desaturase) [EC:1.14.19.-] | ko01040 | K10256 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.