PH01000215G1210's details annotation
1.Annotation
ICBR annotation: ADP-ribosylation factor, putative, expressed
Blast result AT2G47170 : 5.00E-101
Blast annotation: Ras-related small GTP-binding family protein
2.Location
Scaffold: PH01000215
Strand: -
| Region | Start | End |
| gene | 832585 | 835432 |
| mRNA | 832585 | 835432 |
| exon | 832585 | 832941 |
| exon | 833027 | 833145 |
| exon | 833431 | 833550 |
| exon | 833744 | 833814 |
| exon | 834243 | 835432 |
| CDS | 832851 | 832941 |
| CDS | 833027 | 833145 |
| CDS | 833431 | 833550 |
| CDS | 833744 | 833814 |
| CDS | 834243 | 834309 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001637 | protein binding, small GTPase mediated signal transduction, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 7 | 177 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0007264 | small GTPase mediated signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.