PH01000216G1200's details annotation
1.Annotation
ICBR annotation: harpin-induced protein, putative, expressed
Blast result AT1G45688 : 2.10E-43
Blast annotation: -
2.Location
Scaffold: PH01000216
Strand: +
| Region | Start | End |
| gene | 705255 | 710249 |
| mRNA | 705255 | 710249 |
| exon | 705255 | 707851 |
| exon | 708822 | 709007 |
| exon | 709638 | 710249 |
| CDS | 707360 | 707851 |
| CDS | 708822 | 709007 |
| CDS | 709638 | 709922 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001202 | mediator complex, L-arabinose metabolic process, regulation of transcription from RNA polymerase II promoter, alpha-N-arabinofuranosidase activity, RNA_polymerase_II_transcription_cofactor_activity |
| coexpression network | CFinderM001601 | GH35 Glycoside_Hydrolases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 195 | 296 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.