PH01000217G0720's details annotation
1.Annotation
ICBR annotation: tesmin/TSO1-like CXC domain containing protein, expressed
Blast result AT4G29000 : 1.60E-42
Blast annotation: Tesmin/TSO1-like CXC domain-containing protein
2.Location
Scaffold: PH01000217
Strand: -
| Region | Start | End |
| gene | 572520 | 577406 |
| mRNA | 572520 | 577406 |
| exon | 572520 | 573256 |
| exon | 573888 | 574303 |
| exon | 574955 | 575144 |
| exon | 575211 | 575314 |
| exon | 575779 | 575879 |
| exon | 576144 | 576485 |
| exon | 576989 | 577406 |
| CDS | 573075 | 573256 |
| CDS | 573888 | 574303 |
| CDS | 574955 | 575144 |
| CDS | 575211 | 575314 |
| CDS | 575779 | 575879 |
| CDS | 576144 | 576485 |
| CDS | 576989 | 577018 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CPP |
| Transcription_Regulator(from PlantTFDB) | CPP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03638.14 | TCR | 24 | 59 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.