PH01000218G0100's details annotation
1.Annotation
ICBR annotation: OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains
Blast result AT2G44745 : 4.80E-51
Blast annotation: WRKY family transcription factor
2.Location
Scaffold: PH01000218
Strand: -
| Region | Start | End |
| gene | 65621 | 68648 |
| mRNA | 65621 | 68648 |
| exon | 65621 | 66034 |
| exon | 67695 | 67862 |
| exon | 68047 | 68108 |
| exon | 68212 | 68648 |
| CDS | 65869 | 66034 |
| CDS | 67695 | 67862 |
| CDS | 68047 | 68108 |
| CDS | 68212 | 68490 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000023 | Endocytosis vesicle docking involved in exocytosis, RLK-Pelle_LRR-XI-1 (from iTAK) WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 154 | 210 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.