PH01000218G0290's details annotation
1.Annotation
ICBR annotation: ELMO/CED-12 family protein, putative, expressed
Blast result AT2G44770 : 7.70E-98
Blast annotation: ELMO/CED-12 family protein
2.Location
Scaffold: PH01000218
Strand: -
| Region | Start | End |
| gene | 172764 | 178451 |
| mRNA | 172764 | 178451 |
| exon | 172764 | 173014 |
| exon | 173236 | 173406 |
| exon | 173571 | 173740 |
| exon | 174683 | 174777 |
| exon | 175191 | 175238 |
| exon | 175407 | 175527 |
| exon | 176040 | 176094 |
| exon | 176627 | 176742 |
| exon | 177323 | 177391 |
| exon | 177714 | 177823 |
| exon | 177931 | 178451 |
| CDS | 172933 | 173014 |
| CDS | 173236 | 173406 |
| CDS | 173571 | 173740 |
| CDS | 174683 | 174777 |
| CDS | 175191 | 175238 |
| CDS | 175407 | 175527 |
| CDS | 176040 | 176094 |
| CDS | 176627 | 176742 |
| CDS | 177323 | 177391 |
| CDS | 177714 | 177823 |
| CDS | 177931 | 178024 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04727.12 | ELMO_CED12 | 74 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005856 | cytoskeleton |
| GO:0006909 | phagocytosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.