PH01000218G1420's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT1G70210 : 2.30E-47
Blast annotation: CYCLIN D1;1
2.Location
Scaffold: PH01000218
Strand: +
| Region | Start | End |
| gene | 901487 | 908137 |
| mRNA | 901487 | 908137 |
| exon | 901487 | 902340 |
| exon | 902843 | 902929 |
| exon | 905267 | 905468 |
| exon | 905562 | 905692 |
| exon | 905794 | 905889 |
| exon | 906954 | 907040 |
| exon | 907798 | 908137 |
| CDS | 902041 | 902340 |
| CDS | 902843 | 902929 |
| CDS | 905267 | 905468 |
| CDS | 905562 | 905692 |
| CDS | 905794 | 905889 |
| CDS | 906954 | 907040 |
| CDS | 907798 | 907842 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 62 | 126 |
| PF02984.18 | Cyclin_C | 160 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.