PH01000222G0430's details annotation
1.Annotation
ICBR annotation: chloride channel protein, putative, expressed
Blast result AT5G49890 : 0.00E+00
Blast annotation: chloride channel C
2.Location
Scaffold: PH01000222
Strand: -
| Region | Start | End |
| gene | 308477 | 315141 |
| mRNA | 308477 | 315141 |
| exon | 308477 | 308881 |
| exon | 309042 | 310173 |
| exon | 310268 | 310537 |
| exon | 312179 | 312342 |
| exon | 312382 | 312441 |
| exon | 313361 | 313538 |
| exon | 313676 | 313876 |
| exon | 314732 | 315141 |
| CDS | 308792 | 308881 |
| CDS | 309042 | 310173 |
| CDS | 310268 | 310537 |
| CDS | 312179 | 312342 |
| CDS | 312382 | 312441 |
| CDS | 313361 | 313538 |
| CDS | 313676 | 313876 |
| CDS | 314732 | 314931 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00654.19 | Voltage_CLC | 149 | 551 |
| PF00571.27 | CBS | 700 | 748 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005216 | ion channel activity |
| GO:0005247 | voltage-gated chloride channel activity |
| GO:0005515 | protein binding |
| GO:0006821 | chloride transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.