PH01000223G0930's details annotation
1.Annotation
ICBR annotation: Transcription initiation factor TFIID subunit A containing protein, expressed
Blast result AT1G17440 : 9.00E-48
Blast annotation: Transcription initiation factor TFIID subunit A
2.Location
Scaffold: PH01000223
Strand: -
| Region | Start | End |
| gene | 630177 | 636265 |
| mRNA | 630177 | 636265 |
| exon | 630177 | 631090 |
| exon | 631758 | 631822 |
| exon | 631914 | 631992 |
| exon | 632140 | 632214 |
| exon | 632410 | 632919 |
| exon | 633396 | 633608 |
| exon | 634445 | 636265 |
| CDS | 630917 | 631090 |
| CDS | 631758 | 631822 |
| CDS | 631914 | 631992 |
| CDS | 632140 | 632214 |
| CDS | 632410 | 632919 |
| CDS | 633396 | 633608 |
| CDS | 634445 | 634597 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000629 | RLK-Pelle_LRR-XIV (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) transcription factor TFIID complex, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Basal_transcription_factors |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03847.12 | TFIID_20kDa | 282 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIID subunit 12 | ko03022 | K03126 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005669 | transcription factor TFIID complex |
| GO:0006352 | DNA-dependent transcription, initiation |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.