Annotation of co-expression genes

PH01000223G1000's details annotation

1.Annotation

ICBR annotation: mannose-1-phosphate guanyltransferase, putative, expressed

Blast result AT2G39770 : 0.00E+00
Blast annotation: Glucose-1-phosphate adenylyltransferase family protein

2.Location

Scaffold: PH01000223
Strand: +

RegionStartEnd
gene680555682841
mRNA680555682841
exon680555681101
exon681426681488
exon681580681819
exon681892682841
CDS680991681101
CDS681426681488
CDS681580681819
CDS681892682563

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00483.22NTP_transferase2228
PF00132.23Hexapep260295

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fructose and mannose metabolismmannose-1-phosphate guanylyltransferase [EC:2.7.7.13]ko00051K00966
Amino sugar and nucleotide sugar metabolismmannose-1-phosphate guanylyltransferase [EC:2.7.7.13]ko00520K00966

10.Gene Ontology

GO AccessionGO Annotation
GO:0009058biosynthetic process
GO:0016740transferase activity
GO:0016779nucleotidyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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