PH01000224G0260's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G05680 : 9.00E-174
Blast annotation: nuclear pore complex protein-related
2.Location
Scaffold: PH01000224
Strand: -
| Region | Start | End |
| gene | 179444 | 189557 |
| mRNA | 179444 | 189557 |
| exon | 179444 | 179772 |
| exon | 179858 | 180107 |
| exon | 180345 | 181259 |
| exon | 182195 | 182408 |
| exon | 182652 | 182713 |
| exon | 183320 | 183464 |
| exon | 184009 | 184131 |
| exon | 184511 | 184662 |
| exon | 185598 | 185626 |
| exon | 187301 | 187412 |
| exon | 187818 | 189557 |
| CDS | 179504 | 179772 |
| CDS | 179858 | 180107 |
| CDS | 180345 | 181259 |
| CDS | 182195 | 182408 |
| CDS | 182652 | 182713 |
| CDS | 183320 | 183464 |
| CDS | 184009 | 184131 |
| CDS | 184511 | 184662 |
| CDS | 185598 | 185626 |
| CDS | 187301 | 187412 |
| CDS | 187818 | 188228 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10168.8 | Nup88 | 183 | 281 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | nuclear pore complex protein Nup88 | ko03013 | K14318 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.