PH01000224G0580's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT4G31350 : 7.90E-89
Blast annotation: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
2.Location
Scaffold: PH01000224
Strand: +
| Region | Start | End |
| gene | 426552 | 433601 |
| mRNA | 426552 | 433601 |
| exon | 426552 | 429598 |
| exon | 430172 | 430270 |
| exon | 430517 | 430617 |
| exon | 431654 | 431725 |
| exon | 431983 | 432040 |
| exon | 432394 | 432474 |
| exon | 433026 | 433088 |
| exon | 433186 | 433308 |
| exon | 433401 | 433601 |
| CDS | 429059 | 429598 |
| CDS | 430172 | 430270 |
| CDS | 430517 | 430617 |
| CDS | 431654 | 431725 |
| CDS | 431983 | 432040 |
| CDS | 432394 | 432474 |
| CDS | 433026 | 433088 |
| CDS | 433186 | 433308 |
| CDS | 433401 | 433508 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000785 | CMGC_CDKL-Os (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02485.20 | Branch | 178 | 378 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.