PH01000224G0880's details annotation
1.Annotation
ICBR annotation: calcium-transporting ATPase, plasma membrane-type, putative, expressed
Blast result AT5G57110 : 0
Blast annotation: autoinhibited Ca2+ -ATPase, isoform 8
2.Location
Scaffold: PH01000224
Strand: +
| Region | Start | End |
| gene | 660962 | 669784 |
| mRNA | 660962 | 669784 |
| exon | 660962 | 661376 |
| exon | 661719 | 661835 |
| exon | 661911 | 661968 |
| exon | 662761 | 662861 |
| exon | 662934 | 663065 |
| exon | 663156 | 663245 |
| exon | 663581 | 663650 |
| exon | 663949 | 664178 |
| exon | 664264 | 664341 |
| exon | 664423 | 664494 |
| exon | 665145 | 665228 |
| exon | 665301 | 665383 |
| exon | 665453 | 665561 |
| exon | 665643 | 665698 |
| exon | 665775 | 665817 |
| exon | 665911 | 665994 |
| exon | 666122 | 666259 |
| exon | 666413 | 666478 |
| exon | 666563 | 666661 |
| exon | 668080 | 668190 |
| exon | 668274 | 668441 |
| exon | 668717 | 669784 |
| CDS | 661182 | 661376 |
| CDS | 661719 | 661835 |
| CDS | 661911 | 661968 |
| CDS | 662761 | 662861 |
| CDS | 662934 | 663065 |
| CDS | 663156 | 663245 |
| CDS | 663581 | 663650 |
| CDS | 663949 | 664178 |
| CDS | 664264 | 664341 |
| CDS | 664423 | 664494 |
| CDS | 665145 | 665228 |
| CDS | 665301 | 665383 |
| CDS | 665453 | 665561 |
| CDS | 665643 | 665698 |
| CDS | 665775 | 665817 |
| CDS | 665911 | 665994 |
| CDS | 666122 | 666259 |
| CDS | 666413 | 666478 |
| CDS | 666563 | 666661 |
| CDS | 668080 | 668190 |
| CDS | 668274 | 668441 |
| CDS | 668717 | 668722 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12515.7 | CaATP_NAI | 66 | 87 |
| PF00690.25 | Cation_ATPase_N | 156 | 223 |
| PF00122.19 | E1-E2_ATPase | 302 | 502 |
| PF13246.5 | Cation_ATPase | 582 | 657 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005516 | calmodulin binding |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.