PH01000224G0890's details annotation
1.Annotation
ICBR annotation: calcium-transporting ATPase, plasma membrane-type, putative, expressed
Blast result AT5G57110 : 1.00E-147
Blast annotation: autoinhibited Ca2+ -ATPase, isoform 8
2.Location
Scaffold: PH01000224
Strand: +
| Region | Start | End |
| gene | 680210 | 686206 |
| mRNA | 680210 | 686206 |
| exon | 680210 | 681104 |
| exon | 681996 | 682055 |
| exon | 682248 | 682409 |
| exon | 683645 | 683761 |
| exon | 683875 | 683973 |
| exon | 684042 | 684179 |
| exon | 684460 | 684560 |
| exon | 685007 | 685076 |
| exon | 685159 | 685293 |
| exon | 685388 | 685495 |
| exon | 685585 | 685676 |
| exon | 685843 | 685934 |
| exon | 686095 | 686206 |
| CDS | 680808 | 681104 |
| CDS | 681996 | 682055 |
| CDS | 682248 | 682409 |
| CDS | 683645 | 683761 |
| CDS | 683875 | 683973 |
| CDS | 684042 | 684179 |
| CDS | 684460 | 684560 |
| CDS | 685007 | 685076 |
| CDS | 685159 | 685293 |
| CDS | 685388 | 685495 |
| CDS | 685585 | 685676 |
| CDS | 685843 | 685934 |
| CDS | 686095 | 686138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00702.25 | Hydrolase | 96 | 214 |
| PF00689.20 | Cation_ATPase_C | 285 | 470 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.