Annotation of co-expression genes

PH01000225G1450's details annotation

1.Annotation

ICBR annotation: protein kinase, putative, expressed

Blast result AT5G35980 : 3.00E-163
Blast annotation: yeast YAK1-related gene 1

2.Location

Scaffold: PH01000225
Strand: -

RegionStartEnd
gene848354857107
mRNA848354857107
exon848354848537
exon848704848769
exon849008849292
exon849453849578
exon849894849980
exon850091850877
exon851298851376
exon851455851747
exon851998852156
exon852234853006
exon853121853195
exon853675853749
exon854020854127
exon854828854972
exon855194855257
exon855574855713
exon855814855896
exon855974856043
exon856132856241
exon856310856463
exon856860857107
CDS848478848537
CDS848704848769
CDS849008849292
CDS849453849578
CDS849894849980
CDS850091850877
CDS851298851376
CDS851455851747
CDS851998852156
CDS852234853006
CDS853121853195
CDS853675853749
CDS854020854127
CDS854828854972
CDS855194855257
CDS855574855713
CDS855814855896
CDS855974856043
CDS856132856241
CDS856310856463
CDS856860857065

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000746CMGC_DYRK-YAK (from iTAK)
TKL-Pl-6 (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase72225
PF13532.52OG-FeII_Oxy_211301294

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016491oxidoreductase activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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