PH01000226G0700's details annotation
1.Annotation
ICBR annotation: alpha-galactosidase precursor, putative, expressed
Blast result AT5G08370 : 2.00E-117
Blast annotation: alpha-galactosidase 2
2.Location
Scaffold: PH01000226
Strand: +
| Region | Start | End |
| gene | 500378 | 509051 |
| mRNA | 500378 | 509051 |
| exon | 500378 | 500674 |
| exon | 501223 | 501284 |
| exon | 501504 | 501562 |
| exon | 502106 | 502365 |
| exon | 503174 | 503287 |
| exon | 504087 | 504198 |
| exon | 504246 | 504302 |
| exon | 504442 | 504476 |
| exon | 504903 | 505006 |
| exon | 505161 | 505236 |
| exon | 505341 | 505399 |
| exon | 505491 | 505556 |
| exon | 505641 | 505724 |
| exon | 505811 | 505875 |
| exon | 505967 | 506049 |
| exon | 506139 | 506210 |
| exon | 506485 | 506625 |
| exon | 507917 | 509051 |
| CDS | 500495 | 500674 |
| CDS | 501223 | 501284 |
| CDS | 501504 | 501562 |
| CDS | 502106 | 502365 |
| CDS | 503174 | 503287 |
| CDS | 504087 | 504198 |
| CDS | 504246 | 504302 |
| CDS | 504442 | 504476 |
| CDS | 504903 | 505006 |
| CDS | 505161 | 505236 |
| CDS | 505341 | 505399 |
| CDS | 505491 | 505556 |
| CDS | 505641 | 505724 |
| CDS | 505811 | 505875 |
| CDS | 505967 | 506049 |
| CDS | 506139 | 506210 |
| CDS | 506485 | 506625 |
| CDS | 507917 | 508291 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000055 | hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, |
| coexpression network | CFinderM000783 | carbohydrate metabolic process, CE13 Carbohydrate_Esterases hydrolase activity, hydrolyzing O-glycosyl compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16499.4 | Melibiase_2 | 256 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.