Annotation of co-expression genes

PH01000226G0830's details annotation

1.Annotation

ICBR annotation: white-brown complex homolog protein 11, putative, expressed

Blast result AT1G17840 : 0.00E+00
Blast annotation: white-brown complex homolog protein 11

2.Location

Scaffold: PH01000226
Strand: +

RegionStartEnd
gene604956613592
mRNA604956613592
exon604956605356
exon607261607607
exon608957609246
exon609567609738
exon609830609952
exon610046610174
exon610271610465
exon610599610685
exon610765611037
exon611790611897
exon612003612301
exon612915612975
exon613131613592
CDS605209605356
CDS607261607607
CDS608957609246
CDS609567609738
CDS609830609952
CDS610046610174
CDS610271610465
CDS610599610685
CDS610765611037
CDS611790611897
CDS612003612301
CDS612915612975
CDS613131613145

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran108258
PF01061.23ABC2_membrane420625

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.