PH01000226G0850's details annotation
1.Annotation
ICBR annotation: katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Blast result AT5G08390 : 8.60E-97
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000226
Strand: -
| Region | Start | End |
| gene | 631988 | 641717 |
| mRNA | 631988 | 641717 |
| exon | 631988 | 632175 |
| exon | 632280 | 632348 |
| exon | 632436 | 632552 |
| exon | 633292 | 633407 |
| exon | 633993 | 634067 |
| exon | 634167 | 634292 |
| exon | 634399 | 634454 |
| exon | 634537 | 635439 |
| exon | 635666 | 635714 |
| exon | 635762 | 635905 |
| exon | 636002 | 636076 |
| exon | 636217 | 636240 |
| exon | 636922 | 636992 |
| exon | 637216 | 637318 |
| exon | 638599 | 638823 |
| exon | 639733 | 641717 |
| CDS | 632016 | 632175 |
| CDS | 632280 | 632348 |
| CDS | 632436 | 632552 |
| CDS | 633292 | 633407 |
| CDS | 633993 | 634067 |
| CDS | 634167 | 634292 |
| CDS | 634399 | 634454 |
| CDS | 634537 | 635439 |
| CDS | 635666 | 635714 |
| CDS | 635762 | 635905 |
| CDS | 636002 | 636076 |
| CDS | 636217 | 636240 |
| CDS | 636922 | 636992 |
| CDS | 637216 | 637318 |
| CDS | 638599 | 638823 |
| CDS | 639733 | 640074 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000819 | katanin_complex microtubule_severing cellulose biosynthetic process, microtubule binding, cellulose synthase (UDP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 196 | 234 |
| PF13925.5 | Katanin_con80 | 690 | 846 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008017 | microtubule binding |
| GO:0008352 | katanin complex |
| GO:0051013 | microtubule severing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.