PH01000226G0990's details annotation
1.Annotation
ICBR annotation: vacuolar protein-sorting protein bro1, putative, expressed
Blast result AT1G15130 : 0.00E+00
Blast annotation: Endosomal targeting BRO1-like domain-containing protein
2.Location
Scaffold: PH01000226
Strand: -
| Region | Start | End |
| gene | 717713 | 723221 |
| mRNA | 717713 | 723221 |
| exon | 717713 | 718851 |
| exon | 718970 | 719073 |
| exon | 719655 | 719703 |
| exon | 719997 | 720137 |
| exon | 720378 | 720446 |
| exon | 720538 | 720627 |
| exon | 720772 | 721722 |
| exon | 722215 | 723221 |
| CDS | 718297 | 718851 |
| CDS | 718970 | 719073 |
| CDS | 719655 | 719703 |
| CDS | 719997 | 720137 |
| CDS | 720378 | 720446 |
| CDS | 720538 | 720627 |
| CDS | 720772 | 721722 |
| CDS | 722215 | 722889 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03097.17 | BRO1 | 8 | 392 |
| PF13949.5 | ALIX_LYPXL_bnd | 427 | 712 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | programmed cell death 6-interacting protein | ko04144 | K12200 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.