PH01000227G0020's details annotation
1.Annotation
ICBR annotation: auxin response factor 6, putative, expressed
Blast result AT1G30330 : 0.00E+00
Blast annotation: auxin response factor 6
2.Location
Scaffold: PH01000227
Strand: -
| Region | Start | End |
| gene | 32371 | 39297 |
| mRNA | 32371 | 39297 |
| exon | 32371 | 33566 |
| exon | 33648 | 33838 |
| exon | 33946 | 35096 |
| exon | 35192 | 35339 |
| exon | 35514 | 35589 |
| exon | 35840 | 35962 |
| exon | 36034 | 36198 |
| exon | 36325 | 36415 |
| exon | 36475 | 36531 |
| exon | 36588 | 36672 |
| exon | 36789 | 36944 |
| exon | 37037 | 37093 |
| exon | 37190 | 37288 |
| exon | 37546 | 37619 |
| exon | 38116 | 39297 |
| CDS | 33371 | 33566 |
| CDS | 33648 | 33838 |
| CDS | 33946 | 35096 |
| CDS | 35192 | 35339 |
| CDS | 35514 | 35589 |
| CDS | 35840 | 35962 |
| CDS | 36034 | 36198 |
| CDS | 36325 | 36415 |
| CDS | 36475 | 36531 |
| CDS | 36588 | 36672 |
| CDS | 36789 | 36944 |
| CDS | 37037 | 37093 |
| CDS | 37190 | 37288 |
| CDS | 37546 | 37619 |
| CDS | 38116 | 38173 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 119 | 239 |
| PF06507.12 | Auxin_resp | 264 | 347 |
| PF02309.15 | AUX_IAA | 773 | 862 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.