PH01000227G0430's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT3G11510 : 1.00E-50
Blast annotation: Ribosomal protein S11 family protein
2.Location
Scaffold: PH01000227
Strand: +
| Region | Start | End |
| gene | 313994 | 317100 |
| mRNA | 313994 | 317100 |
| exon | 313994 | 314646 |
| exon | 315403 | 315520 |
| exon | 315556 | 315655 |
| exon | 315753 | 315838 |
| exon | 315951 | 316080 |
| exon | 316247 | 317100 |
| CDS | 314579 | 314646 |
| CDS | 315403 | 315520 |
| CDS | 315556 | 315655 |
| CDS | 315753 | 315838 |
| CDS | 315951 | 316080 |
| CDS | 316247 | 316314 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00411.18 | Ribosomal_S11 | 80 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S14e | ko03011 | K02955 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.