PH01000228G0130's details annotation
1.Annotation
ICBR annotation: OsClp2 - Putative Clp protease homologue, expressed
Blast result AT1G66670 : 7.60E-28
Blast annotation: CLP protease proteolytic subunit 3
2.Location
Scaffold: PH01000228
Strand: -
| Region | Start | End |
| gene | 61184 | 65730 |
| mRNA | 61184 | 65730 |
| exon | 61184 | 62270 |
| exon | 62352 | 62447 |
| exon | 65187 | 65730 |
| CDS | 62028 | 62270 |
| CDS | 62352 | 62447 |
| CDS | 65187 | 65360 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00574.22 | CLP_protease | 76 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.