PH01000228G0310's details annotation
1.Annotation
ICBR annotation: transmembrane protein, putative, expressed
Blast result AT5G19930 : 4.60E-91
Blast annotation: Protein of unknown function DUF92, transmembrane
2.Location
Scaffold: PH01000228
Strand: -
| Region | Start | End |
| gene | 178819 | 184549 |
| mRNA | 178819 | 184549 |
| exon | 178819 | 180048 |
| exon | 180555 | 180803 |
| exon | 181840 | 182062 |
| exon | 183386 | 184549 |
| CDS | 179917 | 180048 |
| CDS | 180555 | 180803 |
| CDS | 181840 | 182062 |
| CDS | 183386 | 183657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000057 | RLK-Pelle_LysM (from iTAK) protein phosphorylation, STE_STE20-Pl (from iTAK) RLK-Pelle_LRR-VIII-1 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein kinase activity, regulation of ARF GTPase activity, ATP binding, ARF GTPase activator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01940.15 | DUF92 | 18 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.