Annotation of co-expression genes

PH01000229G0830's details annotation

1.Annotation

ICBR annotation: chromosome segregation protein, putative, expressed

Blast result AT5G62410 : 0.00E+00
Blast annotation: structural maintenance of chromosomes 2

2.Location

Scaffold: PH01000229
Strand: +

RegionStartEnd
gene491877496348
mRNA491877496348
exon491877492616
exon493697494377
exon494465494608
exon494695494985
exon495117495302
exon495407495571
exon495664495723
exon495958496020
exon496089496348
CDS492299492616
CDS493697494377
CDS494465494608
CDS494695494985
CDS495117495302
CDS495407495571
CDS495664495723
CDS495958496020
CDS496089496196

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02463.18SMC_N2615
PF06470.12SMC_hinge518636

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000796condensin complex
GO:0005515protein binding
GO:0005524ATP binding
GO:0005694chromosome
GO:0007076mitotic chromosome condensation
GO:0051276chromosome organization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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