PH01000229G1380's details annotation
1.Annotation
ICBR annotation: FAD binding domain containing protein, expressed
Blast result AT1G24340 : 0.00E+00
Blast annotation: FAD/NAD(P)-binding oxidoreductase family protein
2.Location
Scaffold: PH01000229
Strand: -
| Region | Start | End |
| gene | 852596 | 856617 |
| mRNA | 852596 | 856617 |
| exon | 852596 | 853145 |
| exon | 853288 | 853396 |
| exon | 853576 | 853795 |
| exon | 853969 | 854065 |
| exon | 854155 | 854267 |
| exon | 854380 | 854554 |
| exon | 854847 | 854894 |
| exon | 855019 | 855512 |
| exon | 855596 | 855731 |
| exon | 855828 | 855910 |
| exon | 856163 | 856617 |
| CDS | 852732 | 853145 |
| CDS | 853288 | 853396 |
| CDS | 853576 | 853795 |
| CDS | 853969 | 854065 |
| CDS | 854155 | 854267 |
| CDS | 854380 | 854554 |
| CDS | 854847 | 854894 |
| CDS | 855019 | 855512 |
| CDS | 855596 | 855731 |
| CDS | 855828 | 855910 |
| CDS | 856163 | 856364 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01494.18 | FAD_binding_3 | 46 | 419 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.