PH01000233G0030's details annotation
1.Annotation
ICBR annotation: OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT3G10410 : 0.00E+00
Blast annotation: SERINE CARBOXYPEPTIDASE-LIKE 49
2.Location
Scaffold: PH01000233
Strand: +
| Region | Start | End |
| gene | 16613 | 20970 |
| mRNA | 16613 | 20970 |
| exon | 16613 | 17802 |
| exon | 17878 | 18046 |
| exon | 18151 | 18270 |
| exon | 18678 | 18821 |
| exon | 18915 | 19065 |
| exon | 19288 | 19376 |
| exon | 19457 | 19715 |
| exon | 20214 | 20347 |
| exon | 20660 | 20970 |
| CDS | 17444 | 17802 |
| CDS | 17878 | 18046 |
| CDS | 18151 | 18270 |
| CDS | 18678 | 18821 |
| CDS | 18915 | 19065 |
| CDS | 19288 | 19376 |
| CDS | 19457 | 19715 |
| CDS | 20214 | 20347 |
| CDS | 20660 | 20788 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 104 | 500 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.