PH01000234G0620's details annotation
1.Annotation
ICBR annotation: sucrose transporter BoSUT1, putative, expressed
Blast result AT2G02860 : 1.40E-58
Blast annotation: sucrose transporter 2
2.Location
Scaffold: PH01000234
Strand: +
| Region | Start | End |
| gene | 348448 | 356442 |
| mRNA | 348448 | 356442 |
| exon | 348448 | 349114 |
| exon | 349237 | 349302 |
| exon | 349536 | 349634 |
| exon | 349743 | 349807 |
| exon | 349912 | 349996 |
| exon | 350607 | 350786 |
| exon | 350881 | 351261 |
| exon | 351358 | 351421 |
| exon | 351503 | 351546 |
| exon | 351643 | 351779 |
| exon | 352357 | 352417 |
| exon | 353766 | 353948 |
| exon | 354024 | 354197 |
| exon | 354785 | 354986 |
| exon | 355090 | 355173 |
| exon | 355267 | 355567 |
| exon | 356287 | 356442 |
| CDS | 348899 | 349114 |
| CDS | 349237 | 349302 |
| CDS | 349536 | 349634 |
| CDS | 349743 | 349807 |
| CDS | 349912 | 349996 |
| CDS | 350607 | 350786 |
| CDS | 350881 | 351261 |
| CDS | 351358 | 351421 |
| CDS | 351503 | 351546 |
| CDS | 351643 | 351779 |
| CDS | 352357 | 352417 |
| CDS | 353766 | 353948 |
| CDS | 354024 | 354197 |
| CDS | 354785 | 354986 |
| CDS | 355090 | 355173 |
| CDS | 355267 | 355567 |
| CDS | 356287 | 356380 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13347.5 | MFS_2 | 70 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0022857 | transmembrane transporter activity |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.