PH01000234G1210's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative
Blast result AT3G15130 : 2.80E-90
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000234
Strand: -
| Region | Start | End |
| gene | 778718 | 780927 |
| mRNA | 778718 | 780927 |
| exon | 778718 | 780927 |
| CDS | 779139 | 780875 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 70 | 96 |
| PF01535.19 | PPR | 98 | 124 |
| PF01535.19 | PPR | 168 | 189 |
| PF13812.5 | PPR_3 | 191 | 240 |
| PF01535.19 | PPR | 297 | 322 |
| PF01535.19 | PPR | 374 | 399 |
| PF13041.5 | PPR_2 | 400 | 446 |
| PF01535.19 | PPR | 476 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.