PH01000235G0500's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT2G02960 : 2.60E-33
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000235
Strand: +
| Region | Start | End |
| gene | 324532 | 329990 |
| mRNA | 324532 | 329990 |
| exon | 324532 | 325072 |
| exon | 327749 | 327820 |
| exon | 328107 | 328174 |
| exon | 328400 | 328547 |
| exon | 329127 | 329167 |
| exon | 329385 | 329426 |
| exon | 329720 | 329990 |
| CDS | 324881 | 325072 |
| CDS | 327749 | 327820 |
| CDS | 328107 | 328174 |
| CDS | 328400 | 328547 |
| CDS | 329127 | 329167 |
| CDS | 329385 | 329426 |
| CDS | 329720 | 329744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation metabolic process, branched chain family amino acid metabolic process, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity branched-chain-amino-acid transaminase activity, transferase activity, transferring pentosyl groups, steroid biosynthetic process, histidine biosynthetic process, HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Histidine_metabolism Steroid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 41 | 86 |
| PF12428.7 | DUF3675 | 92 | 167 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.