Annotation of co-expression genes

PH01000235G0770's details annotation

1.Annotation

ICBR annotation: PPR repeat domain containing protein, putative, expressed

Blast result AT3G02650 : 3.00E-106
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01000235
Strand: +

RegionStartEnd
gene524956526959
mRNA524956526959
exon524956526959
CDS525157526803

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001173HB-other Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001419nucleocytoplasmic transport,
GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
intracellular protein transport,
cellular carbohydrate metabolic process,
malate metabolic process,
GTPase activity,
GTP binding,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
intracellular,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glyoxylate_and_dicarboxylate_metabolism
Citrate_cycle_(TCA_cycle)
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR244273
PF01535.19PPR351378
PF13041.5PPR_2381429
PF01535.19PPR454484
PF01535.19PPR498520

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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