PH01000235G0890's details annotation
1.Annotation
ICBR annotation: cyclin-related protein, putative, expressed
Blast result AT1G05960 : 8.00E-124
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000235
Strand: +
| Region | Start | End |
| gene | 619299 | 627636 |
| mRNA | 619299 | 627636 |
| exon | 619299 | 620819 |
| exon | 620941 | 621015 |
| exon | 621544 | 621659 |
| exon | 621743 | 621857 |
| exon | 621934 | 622062 |
| exon | 622565 | 622612 |
| exon | 622747 | 622827 |
| exon | 623475 | 623632 |
| exon | 623718 | 623914 |
| exon | 624026 | 624318 |
| exon | 624662 | 624814 |
| exon | 625145 | 625294 |
| exon | 625673 | 625748 |
| exon | 626082 | 626143 |
| exon | 626252 | 626452 |
| exon | 626550 | 626687 |
| exon | 626782 | 626913 |
| exon | 627019 | 627636 |
| CDS | 620706 | 620819 |
| CDS | 620941 | 621015 |
| CDS | 621544 | 621659 |
| CDS | 621743 | 621857 |
| CDS | 621934 | 622062 |
| CDS | 622565 | 622612 |
| CDS | 622747 | 622827 |
| CDS | 623475 | 623632 |
| CDS | 623718 | 623914 |
| CDS | 624026 | 624318 |
| CDS | 624662 | 624814 |
| CDS | 625145 | 625294 |
| CDS | 625673 | 625748 |
| CDS | 626082 | 626143 |
| CDS | 626252 | 626452 |
| CDS | 626550 | 626687 |
| CDS | 626782 | 626913 |
| CDS | 627019 | 627273 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001355 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) endoplasmic reticulum membrane, membrane coat, regulation of ARF protein signal transduction, GPI anchor biosynthetic process, microtubule associated complex, ARF guanyl-nucleotide exchange factor activity, |
| coexpression network | CFinderM001356 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis GPI anchor metabolic process, regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.