PH01000236G0210's details annotation
1.Annotation
ICBR annotation: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed
Blast result AT1G76400 : 0.00E+00
Blast annotation: Ribophorin I
2.Location
Scaffold: PH01000236
Strand: -
| Region | Start | End |
| gene | 141098 | 148136 |
| mRNA | 141098 | 148136 |
| exon | 141098 | 142261 |
| exon | 142463 | 142687 |
| exon | 143886 | 144044 |
| exon | 145006 | 145095 |
| exon | 145176 | 145244 |
| exon | 145728 | 145904 |
| exon | 146020 | 146167 |
| exon | 146266 | 146894 |
| exon | 147617 | 147661 |
| exon | 147778 | 148136 |
| CDS | 142070 | 142261 |
| CDS | 142463 | 142687 |
| CDS | 143886 | 144044 |
| CDS | 145006 | 145095 |
| CDS | 145176 | 145244 |
| CDS | 145728 | 145904 |
| CDS | 146020 | 146167 |
| CDS | 146266 | 146894 |
| CDS | 147617 | 147661 |
| CDS | 147778 | 147885 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001472 | Protein_processing_in_endoplasmic_reticulum COPI vesicle coat, membrane coat, endoplasmic reticulum, RLK-Pelle_LysM (from iTAK) Golgi-associated vesicle, structural molecule activity, cell redox homeostasis, vesicle-mediated transport, intracellular protein transport, retrograde vesicle-mediated transport, Golgi to ER, nucleotide_phosphorylation Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001557 | RLK-Pelle_LysM (from iTAK) formate-tetrahydrofolate ligase activity, phosphotransferase activity, for other substituted phosphate groups, folic acid-containing compound biosynthetic process, phospholipid biosynthetic process, One_carbon_pool_by_folate Various_types_of_N-glycan_biosynthesis Carbon_fixation_pathways_in_prokaryotes N-Glycan_biosynthesis dolichyl-diphosphooligosaccharide-protein glycotransferase activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04597.13 | Ribophorin_I | 29 | 453 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | oligosaccharyltransferase complex subunit alpha (ribophorin I) | ko00510 | K12666 |
| Various types of N-glycan biosynthesis | oligosaccharyltransferase complex subunit alpha (ribophorin I) | ko00513 | K12666 |
| Protein processing in endoplasmic reticulum | oligosaccharyltransferase complex subunit alpha (ribophorin I) | ko04141 | K12666 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
| GO:0005783 | endoplasmic reticulum |
| GO:0006486 | protein glycosylation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.