PH01000239G0590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G43580 : 6.00E-152
Blast annotation: Sphingomyelin synthetase family protein
2.Location
Scaffold: PH01000239
Strand: -
| Region | Start | End |
| gene | 411803 | 421992 |
| mRNA | 411803 | 421992 |
| exon | 411803 | 413419 |
| exon | 414740 | 414840 |
| exon | 414917 | 414968 |
| exon | 415079 | 415856 |
| exon | 417464 | 417855 |
| exon | 418055 | 418248 |
| exon | 418348 | 418742 |
| exon | 420648 | 421992 |
| CDS | 412502 | 413419 |
| CDS | 414740 | 414840 |
| CDS | 414917 | 414968 |
| CDS | 415079 | 415856 |
| CDS | 417464 | 417855 |
| CDS | 418055 | 418248 |
| CDS | 418348 | 418742 |
| CDS | 420648 | 420982 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14360.5 | PAP2_C | 287 | 354 |
| PF00856.27 | SET | 644 | 742 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.