PH01000239G1240's details annotation
1.Annotation
ICBR annotation: SET domain containing protein, expressed
Blast result AT1G76710 : 4.00E-105
Blast annotation: SET domain group 26
2.Location
Scaffold: PH01000239
Strand: +
| Region | Start | End |
| gene | 886671 | 894176 |
| mRNA | 886671 | 894176 |
| exon | 886671 | 886937 |
| exon | 887569 | 887606 |
| exon | 887969 | 888060 |
| exon | 890279 | 890383 |
| exon | 891079 | 891143 |
| exon | 891270 | 891426 |
| exon | 893390 | 893476 |
| exon | 893573 | 893684 |
| exon | 893739 | 893832 |
| exon | 893966 | 894176 |
| CDS | 886876 | 886937 |
| CDS | 887569 | 887606 |
| CDS | 887969 | 888060 |
| CDS | 890279 | 890383 |
| CDS | 891079 | 891143 |
| CDS | 891270 | 891426 |
| CDS | 893390 | 893476 |
| CDS | 893573 | 893684 |
| CDS | 893739 | 893832 |
| CDS | 893966 | 894173 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 192 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0018024 | histone-lysine N-methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.