Annotation of co-expression genes

PH01000240G0240's details annotation

1.Annotation

ICBR annotation: splicing factor-related, putative, expressed

Blast result AT4G01000 : 3.40E-29
Blast annotation: Ubiquitin-like superfamily protein

2.Location

Scaffold: PH01000240
Strand: -

RegionStartEnd
gene176226179272
mRNA176226179272
exon176226176506
exon177383177914
exon178444179272
CDS176345176506
CDS177383177914
CDS178444179072

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000139metabolic process,
transferase activity, transferring hexosyl groups,
cysteine metabolic process,
phenylalanyl-tRNA aminoacylation,
cysteine desulfurase activity,
phenylalanine-tRNA ligase activity,
coexpression networkCFinderM000875membrane,
cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
acetylglucosaminyltransferase activity,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
coexpression networkCFinderM001825GT66 GlycosylTransferases
cation:chloride_symporter_activity
oligosaccharyl transferase activity,
spindle pole,
microtubule organizing center,
microtubule cytoskeleton organization,
ion transport,
coexpression networkCFinderM001894AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071020406080100120140160180200220240260Highcharts.com

7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13019.5Telomere_Sde27183
PF13297.5Telomere_Sde2_2375434

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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