PH01000240G0260's details annotation
1.Annotation
ICBR annotation: beclin-1, putative, expressed
Blast result AT3G61710 : 1.40E-96
Blast annotation: AUTOPHAGY 6
2.Location
Scaffold: PH01000240
Strand: +
| Region | Start | End |
| gene | 181355 | 185174 |
| mRNA | 181355 | 185174 |
| exon | 181355 | 182352 |
| exon | 182561 | 182731 |
| exon | 183634 | 183758 |
| exon | 184221 | 184269 |
| exon | 184737 | 184895 |
| exon | 185005 | 185174 |
| CDS | 182041 | 182352 |
| CDS | 182561 | 182731 |
| CDS | 183634 | 183758 |
| CDS | 184221 | 184269 |
| CDS | 184737 | 184895 |
| CDS | 185005 | 185100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000866 | Regulation_of_autophagy autophagy, protein metabolic process, IWS1 Transcription_Regulator(from iTAK) transcription, DNA-dependent, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04111.11 | APG6 | 108 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Regulation of autophagy | beclin 1 | K08334 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006914 | autophagy |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.