PH01000240G1190's details annotation
1.Annotation
ICBR annotation: ubiquitin conjugating enzyme protein, putative, expressed
Blast result AT2G33770 : 3.50E-76
Blast annotation: phosphate 2
2.Location
Scaffold: PH01000240
Strand: -
| Region | Start | End |
| gene | 785768 | 789593 |
| mRNA | 785768 | 789593 |
| exon | 785768 | 786140 |
| exon | 786470 | 786781 |
| exon | 786877 | 787016 |
| exon | 789160 | 789593 |
| CDS | 785913 | 786140 |
| CDS | 786470 | 786781 |
| CDS | 786877 | 787016 |
| CDS | 789160 | 789337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000335 | acid-amino acid ligase activity, peptide-methionine_(R)-S-oxide_reductase_activity Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 59 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.