PH01000242G0220's details annotation
1.Annotation
ICBR annotation: protein of unknown function DUF1296 domain containing protein, expressed
Blast result AT1G29370 : 5.40E-80
Blast annotation: Kinase-related protein of unknown function (DUF1296)
2.Location
Scaffold: PH01000242
Strand: +
| Region | Start | End |
| gene | 135784 | 145144 |
| mRNA | 135784 | 145144 |
| exon | 135784 | 136248 |
| exon | 136917 | 137090 |
| exon | 137304 | 137381 |
| exon | 138554 | 138567 |
| exon | 139634 | 140280 |
| exon | 140995 | 141271 |
| exon | 141359 | 141632 |
| exon | 143201 | 143359 |
| exon | 143827 | 144318 |
| exon | 144444 | 145144 |
| CDS | 136087 | 136248 |
| CDS | 136917 | 137090 |
| CDS | 137304 | 137381 |
| CDS | 138554 | 138567 |
| CDS | 139634 | 140280 |
| CDS | 140995 | 141271 |
| CDS | 141359 | 141632 |
| CDS | 143201 | 143359 |
| CDS | 143827 | 144318 |
| CDS | 144444 | 144737 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06972.10 | DUF1296 | 18 | 54 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.