PH01000242G0550's details annotation
1.Annotation
ICBR annotation: iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed
Blast result AT4G22220 : 1.20E-58
Blast annotation: SufE/NifU family protein
2.Location
Scaffold: PH01000242
Strand: +
| Region | Start | End |
| gene | 349787 | 354626 |
| mRNA | 349787 | 354626 |
| exon | 349787 | 350231 |
| exon | 353573 | 353627 |
| exon | 354332 | 354626 |
| CDS | 349925 | 350231 |
| CDS | 353573 | 353627 |
| CDS | 354332 | 354461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001297 | PLATZ Transcription_Regulator(from iTAK) translational termination, iron-sulfur cluster assembly, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01592.15 | NifU_N | 32 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0016226 | iron-sulfur cluster assembly |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.