PH01000243G0050's details annotation
1.Annotation
ICBR annotation: serine acetyltransferase protein, putative, expressed
Blast result AT2G17640 : 3.00E-105
Blast annotation: Trimeric LpxA-like enzymes superfamily protein
2.Location
Scaffold: PH01000243
Strand: +
| Region | Start | End |
| gene | 21405 | 29716 |
| mRNA | 21405 | 29716 |
| exon | 21405 | 22059 |
| exon | 22938 | 23156 |
| exon | 25040 | 25258 |
| exon | 25382 | 25441 |
| exon | 25667 | 25762 |
| exon | 25848 | 25872 |
| exon | 26565 | 26659 |
| exon | 26754 | 26965 |
| exon | 28636 | 28709 |
| exon | 28810 | 28869 |
| exon | 29056 | 29716 |
| CDS | 21808 | 22059 |
| CDS | 22938 | 23156 |
| CDS | 25040 | 25258 |
| CDS | 25382 | 25441 |
| CDS | 25667 | 25762 |
| CDS | 25848 | 25872 |
| CDS | 26565 | 26659 |
| CDS | 26754 | 26965 |
| CDS | 28636 | 28709 |
| CDS | 28810 | 28869 |
| CDS | 29056 | 29072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001309 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis cysteine biosynthetic process from serine, aromatic amino acid family biosynthetic process, Sulfur_metabolism serine O-acetyltransferase activity, 3-deoxy-7-phosphoheptulonate synthase activity, Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06426.13 | SATase_N | 73 | 157 |
| PF06426.13 | SATase_N | 163 | 257 |
| PF00132.23 | Hexapep | 352 | 385 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sulfur metabolism | serine O-acetyltransferase [EC:2.3.1.30] | ko00920 | K00640 |
| Cysteine and methionine metabolism | serine O-acetyltransferase [EC:2.3.1.30] | ko00270 | K00640 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0006535 | cysteine biosynthetic process from serine |
| GO:0009001 | serine O-acetyltransferase activity |
| GO:0016740 | transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.