PH01000243G0350's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT3G45970 : 7.00E-75
Blast annotation: expansin-like A1
2.Location
Scaffold: PH01000243
Strand: -
| Region | Start | End |
| gene | 198810 | 201203 |
| mRNA | 198810 | 201203 |
| exon | 198810 | 199712 |
| exon | 199799 | 199931 |
| exon | 200500 | 200690 |
| exon | 200794 | 200903 |
| exon | 201011 | 201203 |
| CDS | 199464 | 199712 |
| CDS | 199799 | 199931 |
| CDS | 200500 | 200690 |
| CDS | 200794 | 200903 |
| CDS | 201011 | 201155 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 67 | 143 |
| PF01357.20 | Pollen_allerg_1 | 160 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.