PH01000243G0480's details annotation
1.Annotation
ICBR annotation: signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
Blast result AT2G47450 : 5.20E-88
Blast annotation: chloroplast signal recognition particle component (CAO)
2.Location
Scaffold: PH01000243
Strand: +
| Region | Start | End |
| gene | 271979 | 274092 |
| mRNA | 271979 | 274092 |
| exon | 271979 | 274092 |
| CDS | 272307 | 273485 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 124 | 188 |
| PF13857.5 | Ank_5 | 194 | 235 |
| PF00385.23 | Chromo | 324 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.